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It seemed to be an issue while running bootloader and on saving a second, new copy of the code before deleting the original. It did work if i deleted original code first.
I have not got back to further testing because in the meantime some external changes have meant i need to put a lot more code into the mdbt42. So i am just hoping when i am done that the bootloader plus code save will still work fine. I will let you know when I get there.
A dont reorganize flag may end up being useful
So you didn't have any luck with the suggestions in that other thread then?
When were you having problems with the code moving? During the bootloader or when you attempted to save updated code?
I could probably add a flag to files in 'Storage' that said 'don't reorganise' - which might be enough to help you out.