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  • For the record: the USB problem was resolved by switching to gcc 4.8.

    This one works (from the Arduino IDE 1.6.5's Due package):
    gcc version 4.8.3 20140228 (release) [ARM/embedded-4_8-branch revision 208322]

    ... while this one fails (installed from https://launchpad.net/gcc-arm-embedded):­
    gcc version 4.9.3 20150529 (release) [ARM/embedded-4_9-branch revision 227977]

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