Should reset() disable E.enableWatchdog(timeout)

Wondering how to disable E.enableWatchdog(timeout), because it kicks in during code uploading even if reset before upload is marked and E.enableWatchdog(2,false) is missing upload coding?

// code you like to upload and save 
E.enableWatchdog(2,false)

/*
code
*/

function onInit()  {
      E.enableWatchdog(2)
/*
code
*/
}