instantiate an object within another object?

@DrAzzy I edited my original post with all the code. It's really messy and eventually I will split my code up into separate files to later include them.

@Gordon I checked what's in bot by doing:

setInterval(function (e) {
  //bot.getPhValue(90.5);
  console.log(bot);
}, 3000);

I receive what looks like an empty object:

{ }