reset() and save() question

hmm

 _____                 _
|   __|___ ___ ___ _ _|_|___ ___
|   __|_ -| . |  _| | | |   | . |
|_____|___|  _|_| |___|_|_|_|___|
          |_| http://espruino.com
 1v89 Copyright 2016 G.Williams
>u32 = new Uint32Array(4);
=new Uint32Array(4)
>u32[0] = 32;
=32
>save();
=undefined
Erasing Flash.....
Writing....
Compressed 32000 bytes to 1373
Checking...
Done!
>dump();
var u32 = new Uint32Array([32, 0, 0, 0]);
pinMode(D29, "input_pulldown", true);
=undefined
>reset();
=undefined
 _____                 _
|   __|___ ___ ___ _ _|_|___ ___
|   __|_ -| . |  _| | | |   | . |
|_____|___|  _|_| |___|_|_|_|___|
          |_| http://espruino.com
 1v89 Copyright 2016 G.Williams
>save();
=undefined
Erasing Flash.....
Writing....
Compressed 32000 bytes to 1181
Checking...
Done!
>dump();
pinMode(D29, "input_pulldown", true);
=undefined
> 

only one line for a pinMode() coming from reset();